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Assay Configuration
{{vm.assay.name || "Unnamed"}}
Measurement Type
Design Type
Technology Type
Technology Platform
Associated Templates

Sample Annotation Template

{{ vm.assay.samplesDataset.name || 'No Template Selected' }}

A template for loading sample data such as sample characteristics, timepoints, replicates and subject to sample mapping

{{vm.assay.samplesDataset ? 'Change Template':'Choose Template'}}

{{ds.class}} {{ds.name}} - ({{ds.code}})
{{ds.description}}
Structure: {{ds.structure}}
{{vm.previewSampleTemplate.name}} Template Fields Choose Template
Column Name Description
{{var.name}} {{var.label}} {{var.description}}

No Template Selected

Class
{{vm.assay.samplesDataset.class}}
Description
{{vm.assay.samplesDataset.description}}
Structure
{{vm.assay.samplesDataset.structure}}

Select columns to include in this template

Column Variable Name Include Mandatory Description Controlled Vocabulary Order Key Sequence
{{var.name}} {{var.label}} {{var.description}} {{var.dictionaryName}} {{var.order || "Undefined"}} {{var.sequence || "Undefined"}}

    Feature Annotation Template

    {{ vm.assay.featuresDataset.name || 'No Template Selected' }}

    A template for loading feature metadata such as gene names, chromosome location and probset to gene mapping

    {{vm.assay.featuresDataset ? 'Change Template':'Choose Template'}}

    {{ds.class}} {{ds.name}} - ({{ds.code}})
    {{ds.description}}
    Structure: {{ds.structure}}
    {{vm.previewFeatureTemplate.name}} Template Fields Choose Template
    Column Name Description
    {{var.name}} {{var.label}} {{var.description}}

    No Template Selected

    Class
    {{vm.assay.featuresDataset.class}}
    Description
    {{vm.assay.featuresDataset.description}}
    Structure
    {{vm.assay.featuresDataset.structure}}

    Select columns to include in this template

    Header Fields
    Include
    Column Variable Name Include Mandatory Description Controlled Vocabulary Order Key Sequence
    {{var.name}} {{var.label}} {{var.description}} {{var.dictionaryName}} {{var.order || "Undefined"}} {{var.sequence || "Undefined"}}
      Table Fields

      Add New Field

      {{$select.selected.name}}
      {{$item}}
      {{vm.assay.featuresDataset.newField.name}} [ {{vm.assay.featuresDataset.newFieldQualifier[0]}} ]
      Add Field
      Column Variable Name Include Mandatory Description Controlled Vocabulary
      {{var.name}} {{var.label}} {{var.description}} {{var.dictionaryName}}

        Measured Observations Template

        {{ vm.assay.observationsDataset.name || 'No Template Selected' }}

        A template for loading the assay measure data such as a data matrix for single measurements (e.g. normalized log ratio) or a data table for multiple measurements (e.g. CyTOF data)

        {{vm.assay.observationsDataset ? 'Change Template':'Choose Template'}}

        {{ds.class}} {{ds.name}} - ({{ds.code}})
        {{ds.description}}
        Structure: {{ds.structure}}
        {{vm.previewDataTemplate.name}} Template Fields Choose Template
        Column Name Description
        {{var.name}} {{var.label}} {{var.description}}

        No Template Selected

        Class
        {{vm.assay.observationsDataset.class}}
        Description
        {{vm.assay.observationsDataset.description}}
        Structure
        {{vm.assay.observationsDataset.structure}}

        Select columns to include in this template

        Column Variable Name Include Mandatory Description Controlled Vocabulary Order Key Sequence
        {{var.name}} {{var.label}} {{var.description}} {{var.dictionaryName}} {{var.order || "Undefined"}} {{var.sequence || "Undefined"}}